From: Eli Fine (elifine_at_gatech.edu)
Date: Tue Apr 26 2011 - 14:22:11 CDT
I'm trying to add a single extra bond to my NAMD simulation.
I can run the NAMD file fine if I comment out the two extra bond lines
but when I run it with those enabled, then it gives me this error
FATAL ERROR: ABNORMAL EOF FOUND - buffer=*bond 8509 8644 50. 17.*
my extrabonds file consists of just these two lines:
#atom IDs are 0-indexed
bond 8509 8644 50. 17.
I have tried running it without the decimal points in the extra bond file
and with 0s after the decimal points, but nothing seems to work.
As far as I can tell I am following the instructions posted online, but
there are no example files and no one else seems to be running in to this
problem, so I'm confused.
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