topology for DNA

From: Neelanjana Sengupta (
Date: Fri Jan 28 2011 - 06:28:03 CST

Dear all,

I am attempting to simulate a B-type DNA with the CHARMM force field, using
NAMD. However, the topology files corresponding to deoxyribose are not
directly available (only those for ribose/RNA are available), and hence I am
unable to create suitable psf files.

Has anybody done this successfully with NAMD/psfgen?

Thanks and regards,
Neelanjana Sengupta

This archive was generated by hypermail 2.1.6 : Mon Dec 31 2012 - 23:19:45 CST