From: francesco oteri (francesco.oteri_at_gmail.com)
Date: Thu Oct 06 2011 - 09:24:31 CDT
Dear NAMD users,
I've to simulate a protein with an 4Fe-4S and a 3Fe-4S iron sulphur cluster.
Lot of approaches are present in literature.
There are a lot of papers suggesting partial charges but very few clues
about bonded and not bonded parameters.
So i am wondering if any member of this mailing list can send me a link, a
file or some advice can be useful to
obtain the topology of a protein with the iron sulphur clusters.
It is worth noting that I am not interested in electronic properties so also
suggestions involving restraint are ok for me.
Francesco
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