psf problem

From: ipsita basu (
Date: Fri Mar 11 2011 - 08:24:10 CST

     I have a problem while running namd for a system, a error appears :
Fatal error on PE 0> FATAL ERROR: Atom 129 has bad hydrogen group
size. Check for duplicate bonds.
 I check the psf file and find no problem with that atom.
I use the psf in xplor format and parameter file is charmm type.
 Can you please tell me how to get rid of the problem?
  awaiting for yoyr reply.
Thank you.

Ipsita Basu
Research Fellow
c/o : Dr. Chaitali Mukhopadhyay
Rajabazar Science College
92 APC Road
Kolkata - 700009

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