namd 2.7 iverbs error 93620 attaching to node

From: Thomas C. Bishop (bishop_at_tulane.edu)
Date: Tue Nov 23 2010 - 12:11:38 CST

Greetings NAMD (v2.7 NAMD_2.7_Linux-x86_64-ibverbs.tar.gz )

I"m having some sort of config issue that seems related to charmrun connecton taht I'm hoping someone can help me solve.

I have other version namd running so the system and namd.config file are good but using NAMD_2.7_Linux-x86_64-ibverbs.tar.gz
I get this message from charmrun
 error 93620 attaching to node
so I never even get to namd

complete details below

Any assistance greatly aprpeciated.
TOm

compute-01-31 224% echo $CHARM
/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//charmrun
compute-01-31 225% echo $NAMD
/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2

compute-01-31 220% $CHARM ++remote-shell /usr/bin/ssh ++verbose ++nodelist pbsnodes +p16 $NAMD $CONF.conf
Charmrun> charmrun started...
Charmrun> using pbsnodes as nodesfile
Charmrun> adding client 0: "compute-01-31.ccs-priv.edu", IP:10.0.1.36
Charmrun> adding client 1: "compute-01-24.ccs-priv.edu", IP:10.0.1.29
Charmrun> adding client 2: "compute-01-23.ccs-priv.edu", IP:10.0.1.28
Charmrun> adding client 3: "compute-01-05.ccs-priv.edu", IP:10.0.1.10
Charmrun> adding client 4: "compute-01-31.ccs-priv.edu", IP:10.0.1.36
Charmrun> adding client 5: "compute-01-24.ccs-priv.edu", IP:10.0.1.29
Charmrun> adding client 6: "compute-01-23.ccs-priv.edu", IP:10.0.1.28
Charmrun> adding client 7: "compute-01-05.ccs-priv.edu", IP:10.0.1.10
Charmrun> adding client 8: "compute-01-31.ccs-priv.edu", IP:10.0.1.36
Charmrun> adding client 9: "compute-01-24.ccs-priv.edu", IP:10.0.1.29
Charmrun> adding client 10: "compute-01-23.ccs-priv.edu", IP:10.0.1.28
Charmrun> adding client 11: "compute-01-05.ccs-priv.edu", IP:10.0.1.10
Charmrun> adding client 12: "compute-01-31.ccs-priv.edu", IP:10.0.1.36
Charmrun> adding client 13: "compute-01-24.ccs-priv.edu", IP:10.0.1.29
Charmrun> adding client 14: "compute-01-23.ccs-priv.edu", IP:10.0.1.28
Charmrun> adding client 15: "compute-01-05.ccs-priv.edu", IP:10.0.1.10
Charmrun> Charmrun = 10.0.1.36, port = 43580
Charmrun> IBVERBS version of charmrun
Charmrun> Sending "0 10.0.1.36 43580 30642 0" to client 0.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 0.
Charmrun> Starting /usr/bin/ssh compute-01-31.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-31.ccs-priv.edu:0) started
Charmrun> Sending "1 10.0.1.36 43580 30642 0" to client 1.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 1.
Charmrun> Starting /usr/bin/ssh compute-01-24.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-24.ccs-priv.edu:1) started
Charmrun> Sending "2 10.0.1.36 43580 30642 0" to client 2.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 2.
Charmrun> Starting /usr/bin/ssh compute-01-23.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-23.ccs-priv.edu:2) started
Charmrun> Sending "3 10.0.1.36 43580 30642 0" to client 3.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 3.
Charmrun> Starting /usr/bin/ssh compute-01-05.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-05.ccs-priv.edu:3) started
Charmrun> Sending "4 10.0.1.36 43580 30642 0" to client 4.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 4.
Charmrun> Starting /usr/bin/ssh compute-01-31.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-31.ccs-priv.edu:4) started
Charmrun> Sending "5 10.0.1.36 43580 30642 0" to client 5.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 5.
Charmrun> Starting /usr/bin/ssh compute-01-24.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-24.ccs-priv.edu:5) started
Charmrun> Sending "6 10.0.1.36 43580 30642 0" to client 6.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 6.
Charmrun> Starting /usr/bin/ssh compute-01-23.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-23.ccs-priv.edu:6) started
Charmrun> Sending "7 10.0.1.36 43580 30642 0" to client 7.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 7.
Charmrun> Starting /usr/bin/ssh compute-01-05.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-05.ccs-priv.edu:7) started
Charmrun> Sending "8 10.0.1.36 43580 30642 0" to client 8.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 8.
Charmrun> Starting /usr/bin/ssh compute-01-31.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-31.ccs-priv.edu:8) started
Charmrun> Sending "9 10.0.1.36 43580 30642 0" to client 9.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 9.
Charmrun> Starting /usr/bin/ssh compute-01-24.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-24.ccs-priv.edu:9) started
Charmrun> Sending "10 10.0.1.36 43580 30642 0" to client 10.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 10.
Charmrun> Starting /usr/bin/ssh compute-01-23.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-23.ccs-priv.edu:10) started
Charmrun> Sending "11 10.0.1.36 43580 30642 0" to client 11.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 11.
Charmrun> Starting /usr/bin/ssh compute-01-05.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-05.ccs-priv.edu:11) started
Charmrun> Sending "12 10.0.1.36 43580 30642 0" to client 12.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 12.
Charmrun> Starting /usr/bin/ssh compute-01-31.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-31.ccs-priv.edu:12) started
Charmrun> Sending "13 10.0.1.36 43580 30642 0" to client 13.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 13.
Charmrun> Starting /usr/bin/ssh compute-01-24.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-24.ccs-priv.edu:13) started
Charmrun> Sending "14 10.0.1.36 43580 30642 0" to client 14.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 14.
Charmrun> Starting /usr/bin/ssh compute-01-23.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-23.ccs-priv.edu:14) started
Charmrun> Sending "15 10.0.1.36 43580 30642 0" to client 15.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 15.
Charmrun> Starting /usr/bin/ssh compute-01-05.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-05.ccs-priv.edu:15) started
Charmrun> node programs all started
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
Warning: No xauth data; using fake authentication data for X11 forwarding.
Charmrun remote shell(compute-01-31.ccs-priv.edu.4)> remote responding...
Warning: No xauth data; using fake authentication data for X11 forwarding.
Charmrun remote shell(compute-01-31.ccs-priv.edu.0)> remote responding...
Charmrun remote shell(compute-01-31.ccs-priv.edu.12)> remote responding...
Warning: No xauth data; using fake authentication data for X11 forwarding.
Charmrun remote shell(compute-01-31.ccs-priv.edu.4)> starting node-program...
Charmrun remote shell(compute-01-23.ccs-priv.edu.10)> remote responding...
Charmrun remote shell(compute-01-31.ccs-priv.edu.4)> rsh phase successful.
Charmrun remote shell(compute-01-31.ccs-priv.edu.8)> remote responding...
Charmrun remote shell(compute-01-31.ccs-priv.edu.0)> starting node-program...
Charmrun remote shell(compute-01-31.ccs-priv.edu.0)> rsh phase successful.
Charmrun remote shell(compute-01-31.ccs-priv.edu.12)> starting node-program...
Charmrun remote shell(compute-01-31.ccs-priv.edu.12)> rsh phase successful.
Charmrun remote shell(compute-01-31.ccs-priv.edu.8)> starting node-program...
Charmrun remote shell(compute-01-23.ccs-priv.edu.14)> remote responding...
Charmrun remote shell(compute-01-31.ccs-priv.edu.8)> rsh phase successful.
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
Charmrun remote shell(compute-01-23.ccs-priv.edu.6)> remote responding...
Charmrun remote shell(compute-01-23.ccs-priv.edu.10)> starting node-program...
Charmrun remote shell(compute-01-23.ccs-priv.edu.10)> rsh phase successful.
Charmrun remote shell(compute-01-23.ccs-priv.edu.14)> starting node-program...
Charmrun remote shell(compute-01-23.ccs-priv.edu.6)> starting node-program...
Charmrun remote shell(compute-01-23.ccs-priv.edu.6)> rsh phase successful.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Charmrun remote shell(compute-01-23.ccs-priv.edu.14)> rsh phase successful.
Warning: No xauth data; using fake authentication data for X11 forwarding.
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
Charmrun remote shell(compute-01-23.ccs-priv.edu.2)> remote responding...
Charmrun remote shell(compute-01-23.ccs-priv.edu.2)> starting node-program...
Charmrun remote shell(compute-01-23.ccs-priv.edu.2)> rsh phase successful.
Charmrun remote shell(compute-01-24.ccs-priv.edu.1)> remote responding...
Charmrun remote shell(compute-01-24.ccs-priv.edu.9)> remote responding...
Charmrun remote shell(compute-01-24.ccs-priv.edu.1)> starting node-program...
Charmrun remote shell(compute-01-24.ccs-priv.edu.1)> rsh phase successful.
Charmrun remote shell(compute-01-24.ccs-priv.edu.9)> starting node-program...
Charmrun remote shell(compute-01-24.ccs-priv.edu.9)> rsh phase successful.
Charmrun remote shell(compute-01-24.ccs-priv.edu.5)> remote responding...
Charmrun remote shell(compute-01-24.ccs-priv.edu.5)> starting node-program...
Charmrun remote shell(compute-01-24.ccs-priv.edu.5)> rsh phase successful.
Charmrun remote shell(compute-01-24.ccs-priv.edu.13)> remote responding...
Charmrun remote shell(compute-01-24.ccs-priv.edu.13)> starting node-program...
Charmrun remote shell(compute-01-24.ccs-priv.edu.13)> rsh phase successful.
Charmrun remote shell(compute-01-05.ccs-priv.edu.11)> remote responding...
Charmrun remote shell(compute-01-05.ccs-priv.edu.7)> remote responding...
Charmrun remote shell(compute-01-05.ccs-priv.edu.3)> remote responding...
Charmrun remote shell(compute-01-05.ccs-priv.edu.11)> starting node-program...
Charmrun remote shell(compute-01-05.ccs-priv.edu.15)> remote responding...
Charmrun remote shell(compute-01-05.ccs-priv.edu.11)> rsh phase successful.
Charmrun remote shell(compute-01-05.ccs-priv.edu.7)> starting node-program...
Charmrun remote shell(compute-01-05.ccs-priv.edu.7)> rsh phase successful.
Charmrun remote shell(compute-01-05.ccs-priv.edu.3)> starting node-program...
Charmrun remote shell(compute-01-05.ccs-priv.edu.3)> rsh phase successful.
Charmrun remote shell(compute-01-05.ccs-priv.edu.15)> starting node-program...
Charmrun remote shell(compute-01-05.ccs-priv.edu.15)> rsh phase successful.
Charmrun> Waiting for 0-th client to connect.
Charmrun> Waiting for 1-th client to connect.
Charmrun> Waiting for 2-th client to connect.
Charmrun> Waiting for 3-th client to connect.
Charmrun> Waiting for 4-th client to connect.
Charmrun> Waiting for 5-th client to connect.
Charmrun> Waiting for 6-th client to connect.
Charmrun> Waiting for 7-th client to connect.
Charmrun> Waiting for 8-th client to connect.
Charmrun> Waiting for 9-th client to connect.
Charmrun> Waiting for 10-th client to connect.
Charmrun> Waiting for 11-th client to connect.
Charmrun> Waiting for 12-th client to connect.
Charmrun> Waiting for 13-th client to connect.
Charmrun> Waiting for 14-th client to connect.
Charmrun> Waiting for 15-th client to connect.
Charmrun> error 93620 attaching to node:
Socket closed before recv.
compute-01-31 221% $CHARM ++remote-shell /usr/bin/ssh ++verbose ++nodelist pbsnodes +p16 $NAMD $CONF.conf
Charmrun> charmrun started...
Charmrun> using pbsnodes as nodesfile
Charmrun> adding client 0: "compute-01-31.ccs-priv.edu", IP:10.0.1.36
Charmrun> adding client 1: "compute-01-24.ccs-priv.edu", IP:10.0.1.29
Charmrun> adding client 2: "compute-01-23.ccs-priv.edu", IP:10.0.1.28
Charmrun> adding client 3: "compute-01-05.ccs-priv.edu", IP:10.0.1.10
Charmrun> adding client 4: "compute-01-31.ccs-priv.edu", IP:10.0.1.36
Charmrun> adding client 5: "compute-01-24.ccs-priv.edu", IP:10.0.1.29
Charmrun> adding client 6: "compute-01-23.ccs-priv.edu", IP:10.0.1.28
Charmrun> adding client 7: "compute-01-05.ccs-priv.edu", IP:10.0.1.10
Charmrun> adding client 8: "compute-01-31.ccs-priv.edu", IP:10.0.1.36
Charmrun> adding client 9: "compute-01-24.ccs-priv.edu", IP:10.0.1.29
Charmrun> adding client 10: "compute-01-23.ccs-priv.edu", IP:10.0.1.28
Charmrun> adding client 11: "compute-01-05.ccs-priv.edu", IP:10.0.1.10
Charmrun> adding client 12: "compute-01-31.ccs-priv.edu", IP:10.0.1.36
Charmrun> adding client 13: "compute-01-24.ccs-priv.edu", IP:10.0.1.29
Charmrun> adding client 14: "compute-01-23.ccs-priv.edu", IP:10.0.1.28
Charmrun> adding client 15: "compute-01-05.ccs-priv.edu", IP:10.0.1.10
Charmrun> Charmrun = 10.0.1.36, port = 50648
Charmrun> IBVERBS version of charmrun
Charmrun> Sending "0 10.0.1.36 50648 30924 0" to client 0.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 0.
Charmrun> Starting /usr/bin/ssh compute-01-31.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-31.ccs-priv.edu:0) started
Charmrun> Sending "1 10.0.1.36 50648 30924 0" to client 1.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 1.
Charmrun> Starting /usr/bin/ssh compute-01-24.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-24.ccs-priv.edu:1) started
Charmrun> Sending "2 10.0.1.36 50648 30924 0" to client 2.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 2.
Charmrun> Starting /usr/bin/ssh compute-01-23.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-23.ccs-priv.edu:2) started
Charmrun> Sending "3 10.0.1.36 50648 30924 0" to client 3.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 3.
Charmrun> Starting /usr/bin/ssh compute-01-05.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-05.ccs-priv.edu:3) started
Charmrun> Sending "4 10.0.1.36 50648 30924 0" to client 4.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 4.
Charmrun> Starting /usr/bin/ssh compute-01-31.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-31.ccs-priv.edu:4) started
Charmrun> Sending "5 10.0.1.36 50648 30924 0" to client 5.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 5.
Charmrun> Starting /usr/bin/ssh compute-01-24.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-24.ccs-priv.edu:5) started
Charmrun> Sending "6 10.0.1.36 50648 30924 0" to client 6.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 6.
Charmrun> Starting /usr/bin/ssh compute-01-23.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-23.ccs-priv.edu:6) started
Charmrun> Sending "7 10.0.1.36 50648 30924 0" to client 7.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 7.
Charmrun> Starting /usr/bin/ssh compute-01-05.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-05.ccs-priv.edu:7) started
Charmrun> Sending "8 10.0.1.36 50648 30924 0" to client 8.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 8.
Charmrun> Starting /usr/bin/ssh compute-01-31.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-31.ccs-priv.edu:8) started
Charmrun> Sending "9 10.0.1.36 50648 30924 0" to client 9.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 9.
Charmrun> Starting /usr/bin/ssh compute-01-24.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-24.ccs-priv.edu:9) started
Charmrun> Sending "10 10.0.1.36 50648 30924 0" to client 10.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 10.
Charmrun> Starting /usr/bin/ssh compute-01-23.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-23.ccs-priv.edu:10) started
Charmrun> Sending "11 10.0.1.36 50648 30924 0" to client 11.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 11.
Charmrun> Starting /usr/bin/ssh compute-01-05.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-05.ccs-priv.edu:11) started
Charmrun> Sending "12 10.0.1.36 50648 30924 0" to client 12.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 12.
Charmrun> Starting /usr/bin/ssh compute-01-31.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-31.ccs-priv.edu:12) started
Charmrun> Sending "13 10.0.1.36 50648 30924 0" to client 13.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 13.
Charmrun> Starting /usr/bin/ssh compute-01-24.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-24.ccs-priv.edu:13) started
Charmrun> Sending "14 10.0.1.36 50648 30924 0" to client 14.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 14.
Charmrun> Starting /usr/bin/ssh compute-01-23.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-23.ccs-priv.edu:14) started
Charmrun> Sending "15 10.0.1.36 50648 30924 0" to client 15.
Charmrun> find the node program "/scratch00/bishop/bin/NAMD_2.7_Linux-x86_64-ibverbs//namd2" at "/autofs/scratch00/bishop/1kx5min-601/00001" for 15.
Charmrun> Starting /usr/bin/ssh compute-01-05.ccs-priv.edu -l bishop /bin/sh -f
Charmrun> remote shell (compute-01-05.ccs-priv.edu:15) started
Charmrun> node programs all started
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
Warning: No xauth data; using fake authentication data for X11 forwarding.
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
Warning: No xauth data; using fake authentication data for X11 forwarding.
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
/usr/X11R6/bin/xauth: error in locking authority file /u00/bishop/.Xauthority
Charmrun remote shell(compute-01-24.ccs-priv.edu.9)> remote responding...
Charmrun remote shell(compute-01-24.ccs-priv.edu.13)> remote responding...
Charmrun remote shell(compute-01-24.ccs-priv.edu.9)> starting node-program...
Charmrun remote shell(compute-01-24.ccs-priv.edu.9)> rsh phase successful.
Charmrun remote shell(compute-01-05.ccs-priv.edu.15)> remote responding...
Charmrun remote shell(compute-01-05.ccs-priv.edu.11)> remote responding...
Charmrun remote shell(compute-01-24.ccs-priv.edu.13)> starting node-program...
Charmrun remote shell(compute-01-24.ccs-priv.edu.13)> rsh phase successful.
Charmrun remote shell(compute-01-05.ccs-priv.edu.7)> remote responding...
Charmrun remote shell(compute-01-05.ccs-priv.edu.15)> starting node-program...
Charmrun remote shell(compute-01-05.ccs-priv.edu.11)> starting node-program...
Charmrun remote shell(compute-01-05.ccs-priv.edu.15)> rsh phase successful.
Charmrun remote shell(compute-01-05.ccs-priv.edu.11)> rsh phase successful.
Charmrun remote shell(compute-01-31.ccs-priv.edu.12)> remote responding...
Charmrun remote shell(compute-01-05.ccs-priv.edu.7)> starting node-program...
Charmrun remote shell(compute-01-05.ccs-priv.edu.7)> rsh phase successful.
Charmrun remote shell(compute-01-23.ccs-priv.edu.6)> remote responding...
Charmrun remote shell(compute-01-24.ccs-priv.edu.5)> remote responding...
Charmrun remote shell(compute-01-31.ccs-priv.edu.12)> starting node-program...
Charmrun remote shell(compute-01-05.ccs-priv.edu.3)> remote responding...
Charmrun remote shell(compute-01-31.ccs-priv.edu.12)> rsh phase successful.
Charmrun remote shell(compute-01-05.ccs-priv.edu.3)> starting node-program...
Charmrun remote shell(compute-01-24.ccs-priv.edu.5)> starting node-program...
Charmrun remote shell(compute-01-05.ccs-priv.edu.3)> rsh phase successful.
Charmrun remote shell(compute-01-24.ccs-priv.edu.5)> rsh phase successful.
Charmrun remote shell(compute-01-23.ccs-priv.edu.14)> remote responding...
Charmrun remote shell(compute-01-23.ccs-priv.edu.10)> remote responding...
Charmrun remote shell(compute-01-23.ccs-priv.edu.6)> starting node-program...
Charmrun remote shell(compute-01-23.ccs-priv.edu.14)> starting node-program...
Charmrun remote shell(compute-01-23.ccs-priv.edu.6)> rsh phase successful.
Charmrun remote shell(compute-01-23.ccs-priv.edu.14)> rsh phase successful.
Charmrun remote shell(compute-01-31.ccs-priv.edu.4)> remote responding...
Charmrun remote shell(compute-01-31.ccs-priv.edu.4)> starting node-program...
Charmrun remote shell(compute-01-31.ccs-priv.edu.4)> rsh phase successful.
Charmrun remote shell(compute-01-23.ccs-priv.edu.10)> starting node-program...
Charmrun remote shell(compute-01-23.ccs-priv.edu.10)> rsh phase successful.
Charmrun remote shell(compute-01-23.ccs-priv.edu.2)> remote responding...
Charmrun remote shell(compute-01-31.ccs-priv.edu.8)> remote responding...
Charmrun remote shell(compute-01-23.ccs-priv.edu.2)> starting node-program...
Charmrun remote shell(compute-01-23.ccs-priv.edu.2)> rsh phase successful.
Charmrun remote shell(compute-01-31.ccs-priv.edu.8)> starting node-program...
Charmrun remote shell(compute-01-31.ccs-priv.edu.8)> rsh phase successful.
Charmrun remote shell(compute-01-31.ccs-priv.edu.0)> remote responding...
Charmrun remote shell(compute-01-31.ccs-priv.edu.0)> starting node-program...
Charmrun remote shell(compute-01-31.ccs-priv.edu.0)> rsh phase successful.
Warning: No xauth data; using fake authentication data for X11 forwarding.
/usr/X11R6/bin/xauth: creating new authority file /u00/bishop/.Xauthority
Charmrun remote shell(compute-01-24.ccs-priv.edu.1)> remote responding...
Charmrun remote shell(compute-01-24.ccs-priv.edu.1)> starting node-program...
Charmrun remote shell(compute-01-24.ccs-priv.edu.1)> rsh phase successful.
Charmrun> Waiting for 0-th client to connect.
Charmrun> Waiting for 1-th client to connect.
Charmrun> Waiting for 2-th client to connect.
Charmrun> Waiting for 3-th client to connect.
Charmrun> Waiting for 4-th client to connect.
Charmrun> Waiting for 5-th client to connect.
Charmrun> Waiting for 6-th client to connect.
Charmrun> Waiting for 7-th client to connect.
Charmrun> Waiting for 8-th client to connect.
Charmrun> Waiting for 9-th client to connect.
Charmrun> Waiting for 10-th client to connect.
Charmrun> Waiting for 11-th client to connect.
Charmrun> Waiting for 12-th client to connect.
Charmrun> Waiting for 13-th client to connect.
Charmrun> Waiting for 14-th client to connect.
Charmrun> Waiting for 15-th client to connect.
Charmrun> error 93620 attaching to node:
Socket closed before recv.
compute-01-31 222%
compute-01-31 222% quit

C

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:56:24 CST