Re: H-bond and salt bridge between protein dimer

From: Eduard Schreiner (eduard.schreiner_at_gmail.com)
Date: Sat Oct 30 2010 - 08:31:02 CDT

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sure; check the "measure" command, in particular "measure hbonds", in the
VMD user's guide

eddi

On Sat, Oct 30, 2010 at 7:17 AM, surendra jain <sk_iitkgp_at_yahoo.co.in>wrote:

> Hi,
>
> I have a protein dimer. I want to find the hydrogen bonds and salt
> bridges between the 2 protein monomers. Is it possible to do in NAMD/VMD ?
>
> Thanks,
> Surendra
>
>

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Eduard Schreiner
Theoretical and Computational Biophysics Group
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
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