From: Eduard Schreiner (eduard.schreiner_at_gmail.com)
Date: Tue Oct 05 2010 - 22:11:50 CDT
The ADP parameters should be contained in the standard CHARMM 27 force
field for nucleic acids:
top_all27_prot_lipid_na.inp
par_all27_prot_lipid_na.inp
You can find them for instance with the distribution of VMD.
I recall, there was already a question like yours on the mailing list.
You may wanna check that.
eddi
On Tue, Oct 5, 2010 at 8:56 PM, Raul Araya <arayasecchi_at_gmail.com> wrote:
> Dear NAMD users:
>
> Does any one has the topology and/or CHARMM parameters for
> ADENOSINE-5-DIPHOSPHORIBOSE??
>
>
> Raúl Araya Secchi
> B.Sc Molecular Biotechnology.
> Molecular Biotechnology Engineer.
> PhD Student (Biotechnology Program. UNAB, Chile)
> Computational Biology Lab (DLab)
> Center for Mathematical Modeling (CMM)
> Facultad de Ciencias Físicas y Matemáticas.
> Universidad de Chile.
>
-- -- ============================================================================= Eduard Schreiner Theoretical and Computational Biophysics Group NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801 Phone: 217-244-4361 Fax: 217-244-6078 http://www.ks.uiuc.edu/~eschrein/ =============================================================================
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