From: ipsita basu (ibasu788_at_gmail.com)
Date: Tue Jul 27 2010 - 00:36:35 CDT
I am running namd using NPT having system peptide embedded in
lipid bilayer. I have the peptide with N and C terminal capped with
formyl and ethanolamine . But during the simulation run the two capped
groups are breaking from the peptide. Before simulation run I had
restraints on peptide backbone.
Can you please suggest me what should I do to solve the problem. Thank you.
-- Ipsita Basu Research Fellow c/o : Dr. Chaitali Mukhopadhyay Rajabazar Science College 92 APC Road Kolkata - 700009
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