How to calculate binding free energy of a protein-DNA complex by using NAMD?

From: sudipta (sudipta.mml_at_gmail.com)
Date: Fri Jun 25 2010 - 11:14:38 CDT

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Hi All,
       Is it possible to calculate binding free energy of a protein-DNA
complex by using NAMD? Any reference, documentation or suggestion are
greatly appreciated.

Thanks and regards
Sudipta

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