Re: implicit solvent with iapbs

From: Robert Konecny (
Date: Mon Feb 01 2010 - 17:30:09 CST

Hi Bin,

unfortunately APBS (and thus iapbs) currently does not support periodic
boundary conditions (which I'm assuming you would use for a membrane
protein system).



On Wed, Jan 27, 2010 at 11:33:38PM -0800, BIN ZHANG wrote:
> Dear all:
> I was just wondering whether anyone here has tried NAMD with implicit
> solvent using iAPBS? What is the best speedup one can expect using this,
> say for a membrane protein system?
> Thanks,
> Bin

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