RE: simulation configuration file not accesible - other reasons

From: Richard Owczarzy (rowczarzy_at_idtdna.com)
Date: Thu Nov 19 2009 - 17:38:15 CST

Did you specify your configuration file (e.g. run.conf) in command
prompt?

 

namd2.exe +p2 run.conf

 

I usually copy namd2.exe and all input files in the same directory.

You need:

Namd2.exe

Configuration file (e.g., run.conf)

The files specified in configuration file:

Structure file (*.psf)

Coordinate file (*.pdb)

Parameter file used to make psf (e.g., par_all27_prot_lipid_na.inp)

 

You need to specify those files in the configuration file.

 

Sincerely,

 

Richard

 

________________________________

From: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] On
Behalf Of CHINDEA Vlad
Sent: Thursday, November 19, 2009 4:46 PM
To: NAMD list
Subject: namd-l: simulation configuration file not accesible - other
reasons

 

Hi everybody

I recently installed pre-compiled NAMD on a Windows platform but when
trying to run tutorial sample files I get all the time the above
message.

Besides obviouse problems like path issues are there any other possible
causes for this error ?

I have tryed placing all simulation files in NAMD directory (which is
declared in PATH variable), or used absolute paths but nothing works.

Kind regards
Vlad

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