Running NAMD w/ CUDA under Linux

From: Ronald Salesky (rsalesky_at_unm.edu)
Date: Wed Nov 04 2009 - 21:23:30 CST

Hi NAMD experts :)

I am having difficulty running the Linux-x86_64-CUDA
(NVIDIA CUDA acceleration) binary build. Despite setting
the path for the libcudart.so.2, running 'namd2
myconfig.conf' from the cmd line results in the error
message:

namd2: error while loading shared libraries:
libcudart.so.2: cannot open shared object file: No such
file or directory

Any suggestions much appreciated! Details of the bash
shell commands below... (I am running Fedora 11)

Best regards,

Ron

[Ron_at_localhost ~]$ locate libcudart.so.2
/home/Ron/vmd-1.8.7/lib/redistrib/lib_LINUXAMD64/libcudart.so.2
/home/Ron/vmd-1.8.7/lib/vmd/libcudart.so.2

[Ron_at_localhost ~]$ export
PATH=$PATH:/home/Ron/vmd-1.8.7/lib/vmd
[Ron_at_localhost ~]$ namd2 CNT_wb_eq.conf > CNT_wb_eq.log
namd2: error while loading shared libraries:
libcudart.so.2: cannot open shared object file: No such
file or directory
[Ron_at_localhost ~]$

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