From: Chris Harrison (charris5_at_gmail.com)
Date: Mon Aug 17 2009 - 09:53:25 CDT
If you want to generate a topology for use in CHARMM, I would suggest
perusing the CHARMM doc files.
If you want to generate a topology for use in NAMD, you could look at the
-- Chris Harrison, Ph.D. Theoretical and Computational Biophysics Group NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801 char_at_ks.uiuc.edu Voice: 217-244-1733 http://www.ks.uiuc.edu/~char Fax: 217-244-6078 On Wed, Aug 12, 2009 at 12:16 PM, DimitryASuplatov <genesup_at_gmail.com>wrote: > Hello, > > I need a kanamycin topology to run in charmm. I could not find any in > charmm files or in the internet. > 1/ Are you aware of such topology to be already prepared by someone? > 2/ Could you explain to me the basic steps of preparing a topology for > charmm? > > Thank you for your time. > > SDA > >
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