From: doty alexiou (doty_alexiou_at_hotmail.com)
Date: Fri Jul 10 2009 - 03:00:37 CDT
Hi.I am running an NAMD simulation of a protein(folding process) using the extended martini foce field.The simulation has run about 70-80 ns(323 k,timestep 10,PBC,in water,RMSD is about 18 till now).Up until now,there is no sign of the expected secondary structure of the protein.Is there any suggestion about what could be wrong or if i should expect it longer?Thank u.
Invite your mail contacts to join your friends list with Windows Live Spaces. It's easy!
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:51:11 CST