Re: Fatal Error Help

From: Chris Harrison (char_at_ks.uiuc.edu)
Date: Thu Jul 09 2009 - 09:49:25 CDT

Goutham,

Which version of namd are you using; ie, 2.6 vs 2.7b1?
Was it compiled from source or downloaded as a binary?
Is it a from the CVS? If so, when?
Which version of charm++ are you using?
Are you using MPI ? If so, which flavor and which version?

Chris

--
Chris Harrison, Ph.D.
Theoretical and Computational Biophysics Group
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801
char_at_ks.uiuc.edu                            Voice: 217-244-1733
http://www.ks.uiuc.edu/~char               Fax: 217-244-6078
On Mon, Jul 6, 2009 at 4:10 PM, Goutham <gouthambs_at_gmail.com> wrote:
> Hey All,
> When I do a MD run using Charmrun and namd, I get the following error:
>
> FATAL ERROR: Tried to find atom type on node other than node 0
>
> However, when I do a single processor run, without charmrun, the error
> doesn't occur. And the program works just fine. Does any one have any idea
> on what is happening here?
>
> Thanks
> Goutham
>
> PS: Stack Trace -
>
> FATAL ERROR: Tried to find atom type on node other than node 0
> [1] Stack Traceback:
>   [0] CmiAbort+0x5f  [0xa4b62f]
>   [1] _Z8NAMD_diePKc+0x62  [0x4ffe02]
>   [2] _ZN8Molecule17build_atom_statusEv+0x1629  [0x88a8a5]
>   [3] _ZN8Molecule16receive_MoleculeEP8MIStream+0xdb3  [0x88380d]
>   [4] _ZN4Node11namdOneRecvEv+0x4b7  [0x8a0907]
>   [5] _ZN4Node7startupEv+0xebe  [0x89fcba]
>   [6] _ZN12CkIndex_Node18_call_startup_voidEPvP4Node+0x12  [0x89edf8]
>   [7] CkDeliverMessageFree+0x21  [0x9c2af1]
>   [8] _Z15_processHandlerPvP11CkCoreState+0x509  [0x9c20e5]
>   [9] CsdScheduleForever+0xa5  [0xa4c42d]
>   [10] CsdScheduler+0x1c  [0xa4c02e]
>   [11] _Z11master_initiPPc+0x280  [0x508c20]
>   [12] _ZN7BackEnd4initEiPPc+0x31  [0x508999]
>   [13] main+0x2f  [0x50432f]
>   [14] __libc_start_main+0xdb  [0x3486b1c3fb]
>   [15] _ZNSt8ios_base4InitD1Ev+0x4a  [0x4ff76a]
>
>

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