PSF file

From: KIRTANA S (skirtana4_at_gmail.com)
Date: Tue May 12 2009 - 14:29:05 CDT

I am a first time user of NAMD and need assistance in construting the psf
file .In tutorial as its mentioned regarding creation of psf file using
psfgen for ubiquitin .
The command lines
 set ubq [atomselect top protein ]
$ubq writepdb ubqp.pdb

What should I replace if I am using metals like gold with methylthiolates .I
need some advise in this regard.

Thanks
Kirtana

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