Re: Selectively write atoms to dcd files

From: jose correa (corrjose_at_gmail.com)
Date: Mon Apr 13 2009 - 13:10:55 CDT

Dear Dimitry
Other option could be carma program (
http://utopia.duth.gr/~glykos/Carma.html)
# carma -v -fit -atmid ALLID -segid A -segid B my.dcd my.psf
Best wishes
J Correa-basurto

2009/4/13 DimitryASuplatov <genesup_at_gmail.com>

> Hello,
>
> I want to remove WATER from my dcd file and write only the protein
> coordinates. As I understand it could be done with catdcd utiluty which
> is now part of VMD package.
> Could you give me a tip on how could this be done without loading the
> complete dcd into the vmd graphics environment since my system is very
> large.
> Thanks
>
>

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