Re: tutorial for calculation of PMF using namd

From: Hyundeok Song (songhk_at_email.uc.edu)
Date: Mon Mar 02 2009 - 23:46:21 CST

There is a tutorial for PMF calculation by steered molecular dynamics simulations.

Stretching Deca-alanine

http://www.ks.uiuc.edu/Training/Tutorials/science/10Ala-tutorial/tutorial-html/index.html

hyun.

---- Original message ----
>Date: Mon, 2 Mar 2009 22:44:15 -0600
>From: Falgun Shah <fhshah_at_olemiss.edu>
>Subject: namd-l: tutorial for calculation of PMF using namd
>To: namd-l_at_ks.uiuc.edu
>
> Dear NAMD user
>
> Is there any tutorials/ tutorial files (sample
> configuration files) available for calculation of
> PMF using NAMD. Can you please direct me to the
> link. Thanks
>
> --
> Falgun H shah
> PhD candidate (3rd year)
> Department of Medicinal Chemistry
> 2028, Natural Product Center
> University of Mississippi
>
> Ph No: 6629151286(O)
>           662 801 5667(M)
> email: fhshah_at_olemiss.edu

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