Re: regarding cgmd

From: Peter Freddolino (
Date: Mon Nov 24 2008 - 21:17:10 CST

Hi Jani,
you will need to use the cvs version of namd for now; you can then use
the flag
cosangles on
and appropriately flagged angles in the parameter file will be treated
with a cosine term.

jani sahil wrote:
> Hi all,
> I read the papers regarding CGMD specially residue based coarse grain
> modelling ,is it necessary that we need to change
> some parameters of namd while doing CGMD or the normal NAMD can be
> used (it is mentioned in paper that cosine based angle parameter is
> used to modify namd).
> Right now i am using namd-2.6.
> any suggestion is welcome
> regards
> jani

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