Re: build missing residues in pdb

From: Schreiner Eduard (eschrein_at_ks.uiuc.edu)
Date: Mon Nov 24 2008 - 00:09:18 CST

it depends on how much residues you are missing.
maybe you want to check the program "modeller", it's free.
I think, there is even an online server, I'm not sure though.

eddi

On Nov 23, 2008, at 6:48 PM, Anuradha Mittal wrote:

>
> Hi all,
>
> I need to simulate a protein but it is missing some residues in its
> pdb file. Is there any way I can add these missing residues?
> I tried Swiss-PdbViewer, but it doesn't seem to do a great job. Even
> after minimization, the bonds remain grossly distorted.
> Any help will be much appreciated!
>
> Thanks
> Anu
>
>
>
>

=====================================================
Eduard Schreiner
Theoretical and Computational Biophysics Group
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801
Phone: 217-244-4361
Fax: 217-244-6078
http://www.ks.uiuc.edu/~eschrein/
=============================================

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