Problems compiling NAMD

From: Jesper Soerensen (
Date: Fri Oct 03 2008 - 06:54:20 CDT


I've just compiled NAMD on our cluster and this runs through fine, but
when I start a job I get the following error in the log file:
>Info: Entering startup phase 8 with 134856 kB of memory in use.
>Info: Finished startup with 143120 kB of memory in use.
>1 additional process aborted (not shown)

And the cluster job-error log says:
>mpirun noticed that job rank 0 with PID 25232 on node s07n06 exited on
>signal 11 (Segmentation fault).

I am running a Linux-amd64-MPI-icc-ifort version if this helps. Also, let
me know if there is more information I can give to help solve the
problem. I'm just wondering if anybody has seen this type of error

Kind regards,

Jesper Soerensen

Jesper Sørensen, M.Sc.
Biomodelling Group, inSPIN and iNANO centers
Department of Chemistry
University of Aarhus
Langelandsgade 140
8000 Aarhus C
Office: 1510-419
Tlf. 89423385

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