RE: membrane

From: JC Gumbart (gumbart_at_ks.uiuc.edu)
Date: Thu Sep 25 2008 - 00:28:04 CDT

What is the output above that line? You should have something like:

"reading topology file C:/Program Files/University of
Illinois/VMD/plugins/noarch/tcl/membrane1.0/top_all27_prot_lipid.inp"

-----Original Message-----
From: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] On Behalf
Of jose correa
Sent: Wednesday, September 24, 2008 6:44 PM
To: namd-l_at_ks.uiuc.edu
Subject: namd-l: membrane

Dear all
I am making membrane, however, when I type: membrane -l popc -x 50 -y
50 -o membrane
the VMD generated the next error:

reading structure from psf file C:/Program Files/University of
Illinois/VMD/plugins/noarch/tcl/membrane1.0/popc_box.psf

replicating POPC patch 2 by 2...
building segment L11
setting patch for first residue to NONE
setting patch for last residue to NONE
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
unknown residue type POPC
Info: generating structure...
unknown residue type POPC
ERROR: failed on end of segment
MOLECULE DESTROYED BY FATAL ERROR! Use resetpsf to start over.
Can somebody help me?, please.
Best wishes
Jose Correa

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