Re: Managing Log files

From: Alexander A. Vakhrushev (makaveli.lcf_at_gmail.com)
Date: Wed Sep 24 2008 - 13:01:54 CDT

Hi Navdeep!
Perhaps your running minimization. In that case NAMD will still output
information in log file each step.

2008/9/24, Joshua Adelman <jadelman_at_berkeley.edu>:
> Hi Navdeep,
>
> That should work, and I've never seen it fail to. Is the problem that the
> output files are still too long or is it that NAMD is really ignoring the
> outputEnergies parameter?
>
> Josh
>
>
>
>
> On Sep 24, 2008, at 9:52 AM, Nd S wrote:
>
> Hi all
>
> While running a MD simulation in NAMD, the log file created is very large as
> the energy values are stored at every step. I added the command
> "outputEnergies 5000" to output energy into stdout after every 5000 steps as
> per the NAMD manual, but it doesnt work. What's the other way out.
>
> Thanks
> Navdeep
>
>
> ------------------------------------------------------------------------------------------------------
> Joshua L. Adelman
> Biophysics Graduate Group Lab: 510.643.2159
> 218 Wellman Hall Fax: 510.642.7428
> University of California, Berkeley
> http://nature.berkeley.edu/~jadelman
> Berkeley, CA 94720 USA jadelman_at_berkeley.edu
> ------------------------------------------------------------------------------------------------------
>
>

-- 
Best regards,
Dr. Alexander Vakhrushev
Institute of Applied Mechanics
Dep. of Mech. and Phys.-Chem.
of heterogeneous media
UB of Russian Academy of Sciences
34 T. Baramzinoy St.
Izhevsk, Russia 426067
----------------------------------
С уважением,
    Вахрушев Александр Александрович
к.ф.-м.н., с.н.с.
Институт прикладной механики
Уральского Отделения
Российской Академии Наук
426067, г. Ижевск
ул. Т. Барамзиной 34
+7(3412)21-45-83

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:49:52 CST