NAMD COMPILATION ERROR

From: Semorale (semorale_at_gmail.com)
Date: Mon Aug 25 2008 - 08:43:13 CDT

Hi all !!

I need to compiled NAMD in a

SGI ALTIX 350 (cpu itanium2 1,4 ghz ; 16 gb ram )
OS SUSE Linux Entreprise server 10 with

SGI Propack 5

Icc-10.1.017

Ifort-10.1.017

Mkl-10.0.4.023

Charm 6.0

Openmpi-1.2.6
But when I compiled CHARMM 6.0 with the following comand:
*
**./build charm++ mpi-linux-ia64 mpt --no-build-shared ľO*., the following
error message appear:

Error message

Selected Compiler: icc

Selected Options: mpt

Creating dir: mpi-linux-ia64-mpt-icc

Creating dir: mpi-linux-ia64-mpt-icc/tmp

Copying src/scripts/Makefile to mpi-linux-ia64-mpt-icc/tmp

Soft-linking over bin

Soft-linking over lib

Soft-linking over lib_so

Soft-linking over include

Soft-linking over tmp

Generating mpi-linux-ia64-mpt-icc/tmp/conv-mach-pre.sh

Generating mpi-linux-ia64-mpt-icc/tmp/conv-mach-opt.h, conv-mach-opt.sh

Performing '/usr/bin/gmake charm++ OPTS= -O' in mpi-linux-ia64-mpt-icc/tmp

rm -f .gdir

(cd .. ; basename "`pwd`" | sed -e 's_at_-.*@@') > .gdir

pwd

/root/ahora/namd2/charm-6.0/mpi-linux-ia64-mpt-icc/tmp

find . -type l -exec rm {} \;

rm -rf QuickThreads

rm -rf libs

rm -rf ../bin ; mkdir ../bin

rm -rf ../lib ; mkdir ../lib

rm -rf ../lib_so ; mkdir ../lib_so; touch ../lib_so/.charmso

rm -rf ../examples

rm -rf ../tests

rm -rf ../doc ; ln -s ../doc ../doc

./../src/scripts/gatherflat ../../src/scripts .

./gatherflat ../../src/conv-core .

./gatherflat ../../src/conv-ldb .

./gatherflat ../../src/conv-ccs .

./gatherflat ../../src/conv-perf .

./gatherflat ../../src/ck-core .

./gatherflat ../../src/util .

./gatherflat ../../src/ck-perf .

./gatherflat ../../src/ck-ldb .

./gatherflat ../../src/ck-com .

./gatherflat ../../src/conv-com .

./gatherflat ../../src/langs/simplemsg .

./gatherflat ../../src/langs/pvmc .

./gatherflat ../../src/langs/bluegene .

./gatherflat ../../src/langs/f90charm .

./gatherflat ../../src/xlat-i .

./gatherflat ../../src/xlatcpm .

./gathertree ../../src/QuickThreads QuickThreads

./gathertree ../../src/libs libs

./gathertree ../../src/arch/util .

./gathertree ../../src/langs langs

./gathertree ../../src/langs/jade langs/jade

./gathertree ../../src/arch/common .

./gathertree ../../src/arch/`cat .gdir` .

test -f ../../src/arch/`cat .gdir`/gdir_link && cat ../../src/arch/`cat
.gdir`/gdir_link > .gdir.new && ./gathertree ../../src/arch/`cat
.gdir.new` . || true

./gatherflat ../../src/arch/`cat .vdir` .

./gathertree ../../examples ../examples

./gathertree ../../tests ../tests

rm -f ../bin/dep.pl ; cp dep.pl ../bin/

chmod +x charmc

./system_ln ../tmp/charmc ../bin/

ln -s ../../java/bin charmjavabin

ln -s ../../java/bin ../bin/charmjavabin

ln -s charmjavabin/* ../bin/

ln -s ../java ..

rm -f .gdir

rm -rf ../include ; mkdir ../include

./system_ln ../tmp/conv-*.*h ../include

./system_ln ../tmp/cc-*.*h ../include

if [ -x ./special.sh ] ; then ./special.sh ; fi

if [ ! -f conv-common.h ] ; then ( touch conv-common.h ) ; fi

touch dirs+sources

/usr/bin/gmake headerlinks

gmake[1]: Entering directory
`/root/ahora/namd2/charm-6.0/mpi-linux-ia64-mpt-icc/tmp'

./configure

checking machine name... mpi-linux-ia64-mpt-icc

checking "C++ compiler as"... "icpc -fpic -cxxlib-icc -O -nobs"

checking "whether C++ compiler works"... "no"

Cannot compile C++ programs with icpc -fpic -cxxlib-icc

 (check your charm++ version)

gmake[1]: *** [conv-autoconfig.h] Error 1

gmake[1]: Leaving directory
`/root/ahora/namd2/charm-6.0/mpi-linux-ia64-mpt-icc/tmp'

gmake: *** [headers] Error 2

-------------------------------------------------

Charm++ NOT BUILT. Either cd into mpi-linux-ia64-mpt-icc/tmp and try

to resolve the problems yourself, visit

    http://charm.cs.uiuc.edu/

for more information. Otherwise, email the developers at ppl_at_cs.uiuc.edu

* What is the instruction for NAMD compilation SGI ALTIX 350?????.....what
is the error in the compilation??*

any suggestion is very useful...

Thanks in advance,

SAMUEL

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