carbohydrates: CHARMM versus AMBER

From: Gianluca Interlandi (gianluca_at_u.washington.edu)
Date: Fri Jun 27 2008 - 14:16:08 CDT

Dear all,

Does anybody have experience simulating carbohydrates with NAMD? In
particular, I'm interested whether the CHARMM or the AMBER force field is
more accurate to simulate carbohydrates. I want to simulate a protein
attached to mannose.

Any help would be appreciated.

Thanks,

      Gianluca

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Gianluca Interlandi, PhD gianluca_at_u.washington.edu
                     +1 (206) 685 4435
                     +1 (206) 714 4303
                     http://biocroma.unizh.ch/gianluca/

Postdoc at the Department of Bioengineering
at the University of Washington, Seattle WA U.S.A.
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