MD for phospho-aspartate using NAMD

From: sunita gupta (
Date: Wed Jun 25 2008 - 03:37:51 CDT

hello all,
I have a protein with phosphorylated aspartate residue.....of which i want
to set up MD simulation using NAMD...
but i am not getting the appropriate .top and .prm file..
from mailing list i could only find that in stream directory of CHARMM has file naming "toppar_prot_na_all"....
but that particular file is only having parameters for serine and threanine
residues.....and no parameters for aspartate residue....
any help will be highly appreciated.

thanks and regards


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