From: sunita gupta (sunita.bio_at_gmail.com)
Date: Wed Jun 25 2008 - 03:37:51 CDT
I have a protein with phosphorylated aspartate residue.....of which i want
to set up MD simulation using NAMD...
but i am not getting the appropriate .top and .prm file..
from mailing list i could only find that in stream directory of CHARMM
ff....it has file naming "toppar_prot_na_all"....
but that particular file is only having parameters for serine and threanine
residues.....and no parameters for aspartate residue....
any help will be highly appreciated.
thanks and regards
-- SUNITA GUPTA
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