Re: ZINC parameter

From: Jerome Henin (jhenin_at_cmm.chem.upenn.edu)
Date: Tue May 13 2008 - 14:57:48 CDT

Surendra:
I don't know enough about this to give you specific advice, but this
paper might be of interest to you since it describes a "nonbonded"
approach to represent similar metal sites:
http://dx.doi.org/10.1016/j.jsb.2006.10.019
Jerome

On Tue, May 13, 2008 at 1:22 PM, surendra negi <negi009_at_yahoo.com> wrote:
> Dear NAMD Users,
>
> I am trying to simulate Zn in a system shown in the following figure.
>
> The image can be accessed via following link
>
> http://img517.imageshack.us/img517/1724/zincew0.png
>
> Shall i use the ZN parameters defined in top_all27_prot_lipid.inp directly or I have to add the bond link!.
>
> Thank you
>
>
>
>
>

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