From: sripad chandan (
Date: Sun Feb 24 2008 - 10:51:47 CST

Hii all,
I have done the homology modeling of tat protein.
now i want to minimize it with NAMD.
i am attaching my configuration file.
can somebody tell me wheather it is correct for minimization.
I am minimizing it for 20 picoseconds with 1fs time step.
(i.e. 20000).
what should i write for minimize?
i could not get it because i am new to namd.
thanking all,

Sripad Chandan Patnaik
National Institute of Technology, Rourkela

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