From: Christopher Gillespie (gillescche_at_gmail.com)
Date: Tue Jan 01 2008 - 12:23:25 CST
You can potentially get by this by adding
to you *.conf file. I continue to increase this number until I no
longer receive this message.
On Jan 1, 2008, at 10:30 AM, jose correa wrote:
> Dear all
> I am running a NAMD simulacion, but the program yield this message:
> OPENING EXTENDED SYSTEM TRAJECTORY FILE
> FATAL ERROR: Periodic cell has become too small for original patch
> Possible solutions are to restart from a recent checkpoint,
> increase margin, or disable useFlexibleCell for liquid simulation.
> Stack Traceback:
>  _ZN9HomePatch14positionsReadyEi+0x6e [0x824ee3a]
>  _ZN9Sequencer17runComputeObjectsEii+0xcc [0x82bbd5c]
>  _ZN9Sequencer9integrateEv+0xb04 [0x82c0894]
>  _ZN9Sequencer9algorithmEv+0x334 [0x82bb660]
>  _ZN9Sequencer9threadRunEPS_+0xc [0x82ccd1c]
>  namd2 [0x831aa19]
>  Charm++ Runtime: Converse thread (qt_args+0x72 [0x83939ca])
> Can somebody help me?, please.
> Best wishes
> Jose Correa-Basurto
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