Re: angle deformation

From: Leonardo Trabuco (
Date: Fri Dec 19 2008 - 19:45:44 CST

Dear Vlad,

On Fri, Dec 19, 2008 at 6:02 PM, CHINDEA Vlad <> wrote:
> Dear James
> This was a revelation to me ! I could never imagine that angles and
> dihedrals might be missing from the PSF in the absence of any complaints
> from the MD program.
> Since my PSF was built with AutoPSF I have no script that I can adjust but I
> have tryed to do as suggested by you enter the following lines at the VMD
> prompt:

The option to regenerate angles and dihedrals is available in AutoPSF
under the Options menu.


Leonardo Trabuco, Ph.D. candidate
Theoretical and Computational Biophysics Group
University of Illinois at Urbana-Champaign

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