Incorrect PSF file for min.pme

From: Eva Nong (nong2_at_fas.harvard.edu)
Date: Mon Jun 23 2008 - 15:32:58 CDT

Dear all,

I generated a PSF file using a gedit text file and tried to account for as many missing atoms as I could and split the protein and DNA chains before sending it to energy minimization. But the min.out file seemed to stall after the 1st step without leaving me with any error/warning messages. The out file for PSF and minimization are listed as below, respectively:
PSF out file:
www.hcs.harvard.edu/~prisemag/eva/files/3ktqchain.out
Min out file:
www.hcs.harvard.edu/~prisemag/eva/files/min3ktqchain.out
Can you please help me out?

Thanks much

Eva

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