Trajectory file formats & structural alignment

From: Wei Huang (
Date: Thu May 08 2008 - 15:46:13 CDT

Dear VMD users,

I have two question about manipulating trajectory file:

1) Is there any tool that can be used to convert DCD file to AMBER or
Gromacs trajectory file format?

2) How can I align the solute of my system in all my snapshots to that
of the first frame, and then output them into a new dcd file?


Graduate Student
Department of Biological Science

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