From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Wed Mar 12 2008 - 18:46:55 CDT
you can do this with the pairinteractions feature in namd
offers a gui for this in VMD, but it is best to first understand what is
going on in the raw NAMD interface.
Ben Chern wrote:
> as the Section 2.1.3 Energies describes , we can get all the enerygies
> of the ubiquitin-water system.
> Can we get the enerygies (bond, non-bond, etc.) between two atoms in
> the system?
> Thank you in advance.
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