Re: Question about 'NAMD TUTORIAL'

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Wed Mar 12 2008 - 18:46:55 CDT

Hi Ben,
you can do this with the pairinteractions feature in namd
(http://www.ks.uiuc.edu/Research/namd/2.6/ug/node38.html). NAMDEnergy
offers a gui for this in VMD, but it is best to first understand what is
going on in the raw NAMD interface.
Best,
Peter

Ben Chern wrote:
> Hello,
> as the Section 2.1.3 Energies describes , we can get all the enerygies
> of the ubiquitin-water system.
> Can we get the enerygies (bond, non-bond, etc.) between two atoms in
> the system?
>
> Thank you in advance.
>
> --
> Ben

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