minimization command

From: Sourmaidou, Damiani (d.sourmaidou_at_Cranfield.ac.uk)
Date: Wed Jan 23 2008 - 12:35:49 CST

Hello,
 
I am trying to use an input file called "glycoph_min.in" to perform minimization of the system described in http://mccammon.ucsd.edu/~rlaw/ctbp_workshop_rlaw.htm <https://webmail-outlook.cranfield.ac.uk/exchweb/bin/redir.asp?URL=http://mccammon.ucsd.edu/~rlaw/ctbp_workshop_rlaw.htm> . I am not sure if the command I should use is just the "namd2 glycoph_min.in" under VMD in text mode. Are there any other files that I might need? Do I need to run it elsewhere or with a different syntax?
 
Thank you,
 
Damiani

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