how to simulate sugars

From: Richard Casey (rcasey_at_rmcbiosciences.com)
Date: Sun May 27 2007 - 12:21:26 CDT

Hello,

We're using NAMD for protein-sugar simulations. When using psfgen, we get various error messages, often something like "unknown residue type TRE", etc. I think we need a topology file that includes sugars, is that correct? If so, does anyone know where to get such topology files?

Regards,
Richard Casey

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:46:22 CST