NAMD Installation Problem
Hi All
I am installing NAMD2.6 on Intel Linux Machine.
I installed Charm++ with MPI, tcl and fftw2.1.5.
If I go for installing NAMD according to procedure given
I ended up with these errors
obj/ComputePme.o(.text+0x1bc3): In function `ComputePmeMgr::initialize(CkQdMsg*':
: undefined reference to `rfftwnd_create_plan_specific'
obj/ComputePme.o(.text+0x1c59): In function `ComputePmeMgr::initialize(CkQdMsg*':
: undefined reference to `fftw_create_plan_specific'
obj/ComputePme.o(.text+0x1cef): In function `ComputePmeMgr::initialize(CkQdMsg*':
: undefined reference to `fftw_create_plan_specific'
obj/ComputePme.o(.text+0x1d6a): In function `ComputePmeMgr::initialize(CkQdMsg*':
: undefined reference to `rfftwnd_create_plan_specific'
obj/ComputePme.o(.text+0x3615): In function `ComputePmeMgr::gridCalc1()':
: undefined reference to `rfftwnd_real_to_complex'
obj/ComputePme.o(.text+0x3e3a): In function `ComputePmeMgr::gridCalc2()':
: undefined reference to `fftw'
obj/ComputePme.o(.text+0x3ed4): In function `ComputePmeMgr::gridCalc2()':
: undefined reference to `fftw'
obj/ComputePme.o(.text+0x47ae): In function `ComputePmeMgr::gridCalc3()':
: undefined reference to `rfftwnd_complex_to_real'
obj/SimParameters.o(.text+0xc277): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `fftw_import_wisdom_from_file'
obj/SimParameters.o(.text+0xc432): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `rfftwnd_create_plan_specific'
obj/SimParameters.o(.text+0xc43a): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `rfftwnd_destroy_plan'
obj/SimParameters.o(.text+0xc4aa): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `fftw_create_plan_specific'
obj/SimParameters.o(.text+0xc4b2): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `fftw_destroy_plan'
obj/SimParameters.o(.text+0xc527): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `fftw_create_plan_specific'
obj/SimParameters.o(.text+0xc52f): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `fftw_destroy_plan'
obj/SimParameters.o(.text+0xc592): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `fftw_create_plan_specific'
obj/SimParameters.o(.text+0xc59a): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `fftw_destroy_plan'
obj/SimParameters.o(.text+0xc609): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `fftw_create_plan_specific'
obj/SimParameters.o(.text+0xc611): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `fftw_destroy_plan'
obj/SimParameters.o(.text+0xc67d): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `rfftwnd_create_plan_specific'
obj/SimParameters.o(.text+0xc685): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `rfftwnd_destroy_plan'
obj/SimParameters.o(.text+0xc731): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `fftw_export_wisdom_to_file'
obj/SimParameters.o(.text+0xc73e): In function `SimParameters::print_config(PareOptions&, ConfigList*, char*&)':
: undefined reference to `fftw_export_wisdom_to_string'
obj/SimParameters.o(.text+0x100a6): In function `SimParameters::receive_SimParaeters(MIStream*)':
: undefined reference to `fftw_import_wisdom_from_string'
collect2: ld returned 1 exit status
Fatal Error by charmc in directory /home/sanjay/NAMD/NAMD_2.6_Source/Linux-i686MPI
If I search these functions in my fftw .a files, the function matches.
What may be the error
I installed fftw with these options
./configure --enable-float --enable-type-prefix --enable-static --prefix={somewhere}
Thanx in advance
Sanjay
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: Wed Feb 29 2012 - 15:45:30 CST