Re: How to construct .prm file of phospho-THR?

From: L. Michel Espinoza-Fonseca (
Date: Tue Aug 07 2007 - 09:09:19 CDT

Dear Qiang,

Both topologies and parameters can be found in the stream folder of
the latest version of the CHARMM ff. The file you'll need is
"toppar_prot_na_all" (it contains both topologies and parameters).

Good luck!

2007/8/7, Qiang Zhong <>:
> Dear NAMD users:
> I have a phosphorylated THR that need to be parameter, I can find .top
> file of THP in charmm force field, but I could not find .prm file in it.
> Could somebody tell me where to find it or how to construct it?
> Thank you very much!

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