From: Daniel.G.Roberts_at_sanofi-aventis.com
Date: Wed Jul 25 2007 - 16:31:35 CDT
Hello All
Seeking a bit of help complining namd2.6b for a linux cluster.. I would
like to compile namd to use charmrun and mpi..
My cluster env is:
Linux bwdl01-m001.brw 2.6.9-34.ELhugemem #1 SMP Fri Feb 24 17:04:34 EST
2006 i686 i686 i386 GNU/Linux
my gcc is
/usr/bin/gcc -v
Reading specs from /usr/lib/gcc/i386-redhat-linux/3.4.5/specs
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
--infodir=/usr/share/info --enable-shared --enable-threads=posix
--disable-checking --with-system-zlib --enable-__cxa_atexit
--disable-libunwind-exceptions --enable-java-awt=gtk
--host=i386-redhat-linux
Thread model: posix
gcc version 3.4.5 20051201 (Red Hat 3.4.5-2)
Thanks for any help!
Dan
I downloaded the source from
NAMD 2.6b2 Source Code TCBG and I am following the notes section but at
the very end I can't "make" the namd2 and it fails with this note>
charmc exiting...
rm -f moduleinit10502.C moduleinit10502.o
make: *** [namd2] Error 1
Here are all the steps I have done exactly..
Thanks for any help!
starting from here
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source
I have modified the "NOTES" file accordingly with the commands
that I have executed..
Downloaded TCL and FFTW libraries:
and put them in
/global/bwsn002/software/ia32/tcl
/global/bwsn002/software/ia32/fftw
Unpack NAMD and matching Charm++ source code and enter
directory:
tar xzf NAMD_2.6_Source.tar.gz
cd NAMD_2.6_Source
tar xf charm-5.9.tar
cd charm-5.9
Build and test the Charm++/Converse library:
./build charm++ mpi-linux
--basedir=/global/bwsn002/software/ia32/mpi/mpich-1.2.7/ch_p4
--no-build-shared -verbose -O -DCMK_OPTIMIZE=1
cd mpi-linux/tests/charm++/megatest
make pgm
cd ../../../../..
Edit various configuration files:
vi Make.charm (set CHARMBASE to .rootdir/charm-5.9 or full
path to charm)
vi arch/Linux-i686.fftw (fix library name and path to
files)
vi arch/Linux-i686.tcl (fix library version and path to
TCL files)
Set up build directory and compile:
./config tcl fftw Linux-i686-MPI
cd Linux-i686-MPI
make
and this was the portion that failed,,the make to make namd2
at the very end of the output I see>
alot of output chopped out
charmc> ----------- Module dependency search ------------
charmc> ----------- Module dependency search complete
------------
Adding registration for module NeighborLB
Adding registration for module commlib
charmc: Executing mpiCC -D__CHARMC__=1
-I/global/bwsn002/software/ia32/mpi/mpich-1.2.7/ch_p4/incl
ude -c moduleinit10502.C -o moduleinit10502.o
charmc: Executing mpiCC -rdynamic
-L/global/bwsn002/software/ia32/tcl/linux/lib -L/global/bw_1/ho
me/users1/nm67371/tcl/lib
-L/global/bwsn002/software/ia32/fftw/linux/lib -L/global/bw_1/home/user
s1/nm67371/fftw/lib
-L/global/bwsn002/software/ia32/mpi/mpich-1.2.7/ch_p4/lib
-I/global/bwsn001/h
ome/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/include
-DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -
march=pentiumpro -ffast-math -static
-L/global/bwsn002/software/ia32/mpi/mpich-1.2.7/ch_p4/lib -o
namd2
-L/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linu
x/bin/../lib -I/gl
obal/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin
/../include /global/bwsn0
01/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/li
bldb-rand.o obj/buildinfo
.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o
obj/mainfunc.o obj/memusage.o obj/
strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o
obj/AtomMap.o obj/BackEnd.o obj/Broad
castMgr.o obj/BroadcastClient.o obj/CollectionMaster.o
obj/CollectionMgr.o obj/Communicate.o obj/
Compute.o obj/ComputeAngles.o obj/ComputeBonds.o
obj/ComputeConsForce.o obj/ComputeConsForceMsgs.
o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o
obj/ComputeDihedrals.o obj/ComputeDPME.o obj
/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o
obj/ComputeEwald.o obj/ComputeExt.o obj
/ComputeFullDirect.o obj/ComputeHomePatch.o
obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/C
omputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeMap.o
obj/ComputeMgr.o obj/ComputeNonbondedSelf
.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o
obj/ComputeNonbondedStd.o obj/ComputeNon
bondedFEP.o obj/ComputeNonbondedLES.o
obj/ComputeNonbondedPProf.o obj/ComputePatch.o obj/ComputeP
atchPair.o obj/ComputePme.o obj/ComputeRestraints.o
obj/ComputeSphericalBC.o obj/ComputeStir.o ob
j/ComputeTclBC.o obj/ConfigList.o obj/Controller.o
obj/ccsinterface.o obj/DataStream.o obj/DumpBe
nch.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o
obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.
o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o
obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/
GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o
obj/GlobalMasterIMD.o obj/GlobalMa
sterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o
obj/GlobalMasterFreeEnergy.o obj/GlobalMast
erEasy.o obj/GlobalMasterMisc.o obj/GromacsTopFile.o obj/heap.o
obj/HomePatch.o obj/IMDOutput.o o
bj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o
obj/MStream.o obj/MigrateAtomsMs
g.o obj/Molecule.o obj/NamdCentLB.o obj/NamdNborLB.o
obj/NamdState.o obj/NamdOneTools.o obj/Node.
o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o
obj/PatchMgr.o obj/PatchMap.o obj/
PDB.o obj/PDBData.o obj/PmeBase.o obj/PmeKSpace.o
obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/P
roxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o
obj/ReductionMgr.o obj/RefineOnly.
o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o
obj/SimParameters.o obj/Sync.o obj/TclCo
mmands.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o
obj/parm.o obj/imd.o obj/dcdplugin.o modu
leinit10502.o -lmoduleNeighborLB -lmodulecommlib
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Sou
rce/charm-5.9/mpi-linux/bin/../lib/libmemory-default.o
/global/bwsn001/home/users1/nm67371/NAMD_2
.6_Source/charm-5.9/mpi-linux/bin/../lib/libthreads-default.o
-lck -lconv-cplus-y -lconv-core -lc
onv-util -lckqt -lmpich -ldl -ltcl8.3 -ldl -lsrfftw -lsfftw -lm
-lmoduleNeighborLB -lmodulecommli
b -lm
/global/bwsn002/software/ia32/tcl/linux/lib/libtcl8.3.a(tclLoadDl.o)(.te
xt+0x35): In function `Tc
lpLoadFile':
: warning: Using 'dlopen' in statically linked applications
requires at runtime the shared librar
ies from the glibc version used for linking
/global/bwsn002/software/ia32/tcl/linux/lib/libtcl8.3.a(tclUnixPipe.o)(.
text+0xe2): In function `
TclpCreateTempFile':
: warning: the use of `tmpnam' is dangerous, better use
`mkstemp'
/global/bwsn002/software/ia32/tcl/linux/lib/libtcl8.3.a(tclUnixFCmd.o)(.
text+0xc26): In function
`GetGroupAttribute':
: warning: Using 'getgrgid' in statically linked applications
requires at runtime the shared libr
aries from the glibc version used for linking
/global/bwsn002/software/ia32/tcl/linux/lib/libtcl8.3.a(tclUnixFCmd.o)(.
text+0xe38): In function
`SetGroupAttribute':
: warning: Using 'getgrnam' in statically linked applications
requires at runtime the shared libr
aries from the glibc version used for linking
/global/bwsn002/software/ia32/tcl/linux/lib/libtcl8.3.a(tclUnixFCmd.o)(.
text+0xc71): In function
`GetGroupAttribute':
: warning: Using 'endgrent' in statically linked applications
requires at runtime the shared libr
aries from the glibc version used for linking
/global/bwsn002/software/ia32/tcl/linux/lib/libtcl8.3.a(tclUnixFCmd.o)(.
text+0xf4d): In function
`SetOwnerAttribute':
: warning: Using 'getpwnam' in statically linked applications
requires at runtime the shared libr
aries from the glibc version used for linking
obj/dcdlib.o(.text+0x11db): In function `write_dcdheader(int,
char*, int, int, int, int, int, dou
ble, int)':
: warning: Using 'getpwuid' in statically linked applications
requires at runtime the shared libr
aries from the glibc version used for linking
/global/bwsn002/software/ia32/tcl/linux/lib/libtcl8.3.a(tclUnixFCmd.o)(.
text+0xd31): In function
`GetOwnerAttribute':
: warning: Using 'endpwent' in statically linked applications
requires at runtime the shared libr
aries from the glibc version used for linking
/global/bwsn002/software/ia32/tcl/linux/lib/libtcl8.3.a(tclUnixChan.o)(.
text+0xf01): In function
`TcpGetOptionProc':
: warning: Using 'gethostbyaddr' in statically linked
applications requires at runtime the shared
libraries from the glibc version used for linking
obj/vmdsock.o(.text+0xa6): In function `vmdsock_connect(void*,
char const*, int)':
: warning: Using 'gethostbyname' in statically linked
applications requires at runtime the shared
libraries from the glibc version used for linking
/global/bwsn002/software/ia32/tcl/linux/lib/libtcl8.3.a(tclIOSock.o)(.te
xt+0x47): In function `Tc
lSockGetPort':
: warning: Using 'getservbyname' in statically linked
applications requires at runtime the shared
libraries from the glibc version used for linking
/usr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)(.text+0x1
4fc): In function `free':
: multiple definition of `free'
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/
bin/../lib/libmemory-defa
ult.o(.text+0x35bc): first defined here
/usr/bin/ld: Warning: size of symbol `free' changed from 29 in
/global/bwsn001/home/users1/nm6737
1/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/libmemory-default.o to
175 in /usr/lib/gcc/i386-
redhat-linux/3.4.5/../../../libc.a(malloc.o)
/usr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)(.text+0x3
058): In function `malloc
':
: multiple definition of `malloc'
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/
bin/../lib/libmemory-defa
ult.o(.text+0x3583): first defined here
/usr/bin/ld: Warning: size of symbol `malloc' changed from 57 in
/global/bwsn001/home/users1/nm67
371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/libmemory-default.o
to 373 in /usr/lib/gcc/i38
6-redhat-linux/3.4.5/../../../libc.a(malloc.o)
/usr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)(.text+0x3
60c): In function `reallo
c':
: multiple definition of `realloc'
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/
bin/../lib/libmemory-defa
ult.o(.text+0x3632): first defined here
/usr/bin/ld: Warning: size of symbol `realloc' changed from 40
in /global/bwsn001/home/users1/nm6
7371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/libmemory-default.o
to 667 in /usr/lib/gcc/i3
86-redhat-linux/3.4.5/../../../libc.a(malloc.o)
/usr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)(.data+0x0
): multiple definition of
`__libc_malloc_initialized'
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/
bin/../lib/libmemory-defa
ult.o(.data+0x10): first defined here
/usr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)(.text+0x4
24): In function `_int_ne
w_arena':
: multiple definition of `_int_new_arena'
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/
bin/../lib/libmemory-defa
ult.o(.text+0x613): first defined here
/usr/bin/ld: Warning: size of symbol `_int_new_arena' changed
from 187 in /global/bwsn001/home/us
ers1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/libmemory-de
fault.o to 180 in /usr/li
b/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)
/usr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)(.text+0xd
bc): In function `_int_fr
ee':
: multiple definition of `_int_free'
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/
bin/../lib/libmemory-defa
ult.o(.text+0x2737): first defined here
/usr/bin/ld: Warning: size of symbol `_int_free' changed from
338 in /global/bwsn001/home/users1/
nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/libmemory-default
.o to 1658 in /usr/lib/gc
c/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)
/usr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)(.text+0x1
5ac): In function `_int_m
alloc':
: multiple definition of `_int_malloc'
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/
bin/../lib/libmemory-defa
ult.o(.text+0x21db): first defined here
/usr/bin/ld: Warning: size of symbol `_int_malloc' changed from
1372 in /global/bwsn001/home/user
s1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/libmemory-defa
ult.o to 3101 in /usr/lib
/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)
/usr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)(.text+0x2
29c): In function `_int_m
emalign':
: multiple definition of `_int_memalign'
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/
bin/../lib/libmemory-defa
ult.o(.text+0x2dd9): first defined here
/usr/bin/ld: Warning: size of symbol `_int_memalign' changed
from 397 in /global/bwsn001/home/use
rs1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/libmemory-def
ault.o to 413 in /usr/lib
/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)
/usr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)(.text+0x2
43c): In function `_int_v
alloc':
: multiple definition of `_int_valloc'
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/
bin/../lib/libmemory-defa
ult.o(.text+0x31cb): first defined here
/usr/bin/ld: Warning: size of symbol `_int_valloc' changed from
48 in /global/bwsn001/home/users1
/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/libmemory-defaul
t.o to 63 in /usr/lib/gcc
/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)
/usr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)(.text+0x2
5b0): In function `_int_r
ealloc':
: multiple definition of `_int_realloc'
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/
bin/../lib/libmemory-defa
ult.o(.text+0x2988): first defined here
/usr/bin/ld: Warning: size of symbol `_int_realloc' changed from
1105 in /global/bwsn001/home/use
rs1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/libmemory-def
ault.o to 1065 in /usr/li
b/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)
/usr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)(.text+0x3
8a8): In function `__mall
oc_check_init':
: multiple definition of `__malloc_check_init'
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/
bin/../lib/libmemory-defa
ult.o(.text+0xdd2): first defined here
/usr/bin/ld: Warning: size of symbol `__malloc_check_init'
changed from 111 in /global/bwsn001/ho
me/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/libmemo
ry-default.o to 154 in /u
sr/lib/gcc/i386-redhat-linux/3.4.5/../../../libc.a(malloc.o)
collect2: ld returned 1 exit status
Fatal Error by charmc in directory
/global/bw_1/home/users1/nm67371/NAMD_2.6_Source/Linux-i686-MP
I
Command mpiCC -rdynamic
-L/global/bwsn002/software/ia32/tcl/linux/lib -L/global/bw_1/home/user
s1/nm67371/tcl/lib
-L/global/bwsn002/software/ia32/fftw/linux/lib
-L/global/bw_1/home/users1/nm67
371/fftw/lib
-L/global/bwsn002/software/ia32/mpi/mpich-1.2.7/ch_p4/lib
-I/global/bwsn001/home/use
rs1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/include
-DCMK_OPTIMIZE=1 -Iinc -Isrc -O3 -march=p
entiumpro -ffast-math -static
-L/global/bwsn002/software/ia32/mpi/mpich-1.2.7/ch_p4/lib -o namd2
-L/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linu
x/bin/../lib -I/global/bw
sn001/home/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../inc
lude /global/bwsn001/home
/users1/nm67371/NAMD_2.6_Source/charm-5.9/mpi-linux/bin/../lib/libldb-ra
nd.o obj/buildinfo.o obj/
common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o
obj/mainfunc.o obj/memusage.o obj/strlib.
o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o
obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr
.o obj/BroadcastClient.o obj/CollectionMaster.o
obj/CollectionMgr.o obj/Communicate.o obj/Compute
.o obj/ComputeAngles.o obj/ComputeBonds.o obj/ComputeConsForce.o
obj/ComputeConsForceMsgs.o obj/C
omputeCrossterms.o obj/ComputeCylindricalBC.o
obj/ComputeDihedrals.o obj/ComputeDPME.o obj/Comput
eDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o
obj/ComputeEwald.o obj/ComputeExt.o obj/Comput
eFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o
obj/ComputeImpropers.o obj/ComputeG
lobal.o obj/ComputeGlobalMsgs.o obj/ComputeMap.o
obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/
ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o
obj/ComputeNonbondedStd.o obj/ComputeNonbondedF
EP.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o
obj/ComputePatch.o obj/ComputePatchPai
r.o obj/ComputePme.o obj/ComputeRestraints.o
obj/ComputeSphericalBC.o obj/ComputeStir.o obj/Compu
teTclBC.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o
obj/DataStream.o obj/DumpBench.o o
bj/FreeEnergyAssert.o obj/FreeEnergyGroup.o
obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/F
reeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o
obj/FreeEnergyVector.o obj/GlobalM
aster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o
obj/GlobalMasterIMD.o obj/GlobalMasterTcl
.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o
obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.
o obj/GlobalMasterMisc.o obj/GromacsTopFile.o obj/heap.o
obj/HomePatch.o obj/IMDOutput.o obj/Info
Stream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o
obj/MStream.o obj/MigrateAtomsMsg.o obj
/Molecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdState.o
obj/NamdOneTools.o obj/Node.o obj/O
utput.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o
obj/PatchMgr.o obj/PatchMap.o obj/PDB.o o
bj/PDBData.o obj/PmeBase.o obj/PmeKSpace.o obj/PmeRealSpace.o
obj/ProcessorPrivate.o obj/ProxyMgr
.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o
obj/ReductionMgr.o obj/RefineOnly.o obj/S
criptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o
obj/SimParameters.o obj/Sync.o obj/TclCommands.
o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o
obj/imd.o obj/dcdplugin.o moduleinit1
0502.o -lmoduleNeighborLB -lmodulecommlib
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Source/cha
rm-5.9/mpi-linux/bin/../lib/libmemory-default.o
/global/bwsn001/home/users1/nm67371/NAMD_2.6_Sour
ce/charm-5.9/mpi-linux/bin/../lib/libthreads-default.o -lck
-lconv-cplus-y -lconv-core -lconv-uti
l -lckqt -lmpich -ldl -ltcl8.3 -ldl -lsrfftw -lsfftw -lm
-lmoduleNeighborLB -lmodulecommlib -lm r
eturned error code 1
charmc exiting...
rm -f moduleinit10502.C moduleinit10502.o
make: *** [namd2] Error 1
[nm67371_at_bwdl01-m001 Linux-i686-MPI]$
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:45:00 CST