Re: Running NAMD on Cluster machine with Myrinet network with MPI and PBS

From: Alexandre A. Vakhrouchev (makaveli.lcf_at_gmail.com)
Date: Tue Jun 05 2007 - 10:34:39 CDT

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You should compile NAMD for your cluster.
Read instruction provided in sourcecode README.
First of all build charm++, then NAMD.
Chose your arch, mpi and appropriated Myrinet driver gm or gm2.

Best regards,
Dr. Alexandre Vakhrouchev

2007/6/5, Alessio Alexiadis <sersunzo_at_yahoo.com>:
>
> Dear all,
>
> I am about to run NAMD on an AMD based Cluster with Myrinet network with
> MPI and PBS installed.
>
> Do you know if there is a pre-build executable appropriate version I could
> use ?
> Do I have to recompile the whole code on our machine ?
>
> Can you provide any further information you think could be useful to run
> NAMD on the machine?
>
> Thanks in advance
> Alessio
>
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