Re: compiling NAMD on an elan-linux-ia64 arch

From: Vlad Cojocaru (Vlad.Cojocaru_at_eml-r.villa-bosch.de)
Date: Fri Apr 13 2007 - 03:50:20 CDT

Hi Peter,

Thanks for your answer ..... I did follow that recipe step-by-step ....

However one problem it was that the intel 7.1 compilers are not
available anymore on the system ... So, I tried 8.1 and that's when I
got the errors ..

Alessandro mentioned in that email that he was successful with 8.1
following the same steps ....

cheers
vlad

Peter Freddolino wrote:

>Hi Vlad,
>I'm not familiar with the elan compile target, but you might want to
>have a look at the changes to your Make.charm file suggested in the
>thread at
>http://www.ks.uiuc.edu/Research/namd/mailing_list/namd-l/4939.html.
>
>Peter
>
>Vlad Cojocaru wrote:
>
>
>>Dear NAMD users,
>>
>>I am trying to compile NAMD on a "elan-linux-ia64" architecture using
>>intel 8.1 compilers ..
>>
>>build charm++ works fine but as I go to test it I get the error below.
>>
>>Does anybody have any idea how to fix this?
>>
>>Thanks a lot
>>vlad
>>
>>../../../bin/charmc -o pgm megatest.o groupring.o nodering.o
>>varsizetest.o varraystest.o groupcast.o nodecast.o synctest.o fib.o
>>arrayring.o tempotest.o packtest.o queens.o migration.o marshall.o
>>priomsg.o priotest.o rotest.o statistics.o templates.o inherit.o
>>reduction.o callback.o immediatering.o bitvector.o -languagecharm++
>>/usr/lib/libelan.so: undefined reference to `elan4_unpin_region'
>>/usr/lib/libelan.so: undefined reference to `_elan4_alloc_cmdq'
>>/usr/lib/libelan.so: undefined reference to `elan4_pin_region'
>>/usr/lib/libelan.so: undefined reference to `elan4_remote_setevent_eop'
>>/usr/lib/libelan.so: undefined reference to `elan4_sendqueue_pkt'
>>Fatal Error by charmc in directory
>>/home/cojocaru/software/NAMD_2.6_Source/charm-5.9/elan-linux-ia64-ifort-icc/tests/charm++/megatest
>>
>> Command icpc -i_dynamic -rdynamic -L/usr/lib -L/usr/lib -o pgm
>>-L../../../bin/../lib -I../../../bin/../include
>>../../../bin/../lib/libldb-rand.o megatest.o groupring.o nodering.o
>>varsizetest.o varraystest.o groupcast.o nodecast.o synctest.o fib.o
>>arrayring.o tempotest.o packtest.o queens.o migration.o marshall.o
>>priomsg.o priotest.o rotest.o statistics.o templates.o inherit.o
>>reduction.o callback.o immediatering.o bitvector.o moduleinit29062.o
>>../../../bin/../lib/libmemory-default.o
>>../../../bin/../lib/libthreads-default.o -lck -lconv-cplus-y -lconv-core
>>-lconv-util -lckqt -lelan -ldl -lm returned error code 1
>>charmc exiting...
>>make: *** [pgm] Error 1
>>
>>
>>
>>
>
>
>

-- 
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Dr. Vlad Cojocaru
EML Research gGmbH
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Fax: ++49-6221-533298
e-mail:Vlad.Cojocaru[at]eml-r.villa-bosch.de
http://projects.villa-bosch.de/mcm/people/cojocaru/
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