value of B column is zero

From: Dhiraj Srivastava (
Date: Sun Oct 08 2006 - 00:34:16 CDT

Hi all
        sorry for the previous mail. actually the problem is in my structure
file. when i ma generating the structure file, i am getting the pdb file in
which values of B column are zero. my psfgen script is
package require psfgen

topology top_all27_prot_lipid.rtf
topology fad_top.inp

pdbalias residue HIS HSE
pdbalias atom ILE CD1 CD
pdbalias residue HOH TIP3

segment A {pdb chain_A.pdb}
coordpdb chain_A.pdb A

segment B {pdb chain_B.pdb}
coordpdb chain_B.pdb B

segment F {pdb FAD.pdb}
coordpdb FAD.pdb F

segment W {
auto none
pdb water.pdb}

pdbalias atom HOH O OH2

coordpdb water.pdb

#segment T {pdb TFB.pdb}
#coordpdb TFB.pdb T


#multiply 10 T

writepdb prodh1.pdb
writepsf prodh1.psf


can anyone suggest me where is the problem. is there any proble in the
psfgen script or problem may be in the topology file.

Dhiraj Kumar Srivastava
Department of Chemistry
University of Missouri-Columbia
MO, 65211
Ph. no. 001-573-639-0153

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