Re: vmd-l: psfgen: last CTER does not work

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Thu Jun 15 2006 - 14:35:02 CDT

Dear Morad,
could you please be more specific as to what did happen? Giving excerpts
from your pdb before and after running psfgen would be helpful, so we
can see if any changes did occur, and what your atom naming looks like.

Best,
Peter

Morad Alawneh wrote:
> Dear users,
>
>
> When I tried to build a segment using vmd, the option "last CTER" did
> not do what it show do, i.e: replace C=O by O-C=O. This is how I did it
>
> segment M2A {
> first NTER
> last CTER
> auto none
> pdb ChainA.pdb
> }
>
>
> Any idea about this problem?
>
> Thanks
>
> --
>
>
>
> /*Morad Alawneh*/
>
> *Department of Chemistry and Biochemistry*
>
> *C100 BNSN, BYU*
>
> *Provo, UT 84602*
>

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