Re: Is the GBSA model in NAMD ?

From: dimka (newyorkdimka_at_gmail.com)
Date: Tue Jun 13 2006 - 15:17:55 CDT

I talked about this with Klaus Schulten last year at VMD workshop, and
he said there are currently NO plans to incorporate GBSA into NAMD.
His rational was that as computers get faster there eventually will be
no need for it.

-Dmitry

On 6/13/06, Joshua D. Moore <jdmoore_at_unity.ncsu.edu> wrote:
> Dear Mark,
>
> I (and I hope others) find your remark unacceptable. Many people who are
> just starting out may ask questions that you do not want to answer.
> Instead of replying in a rude way, DON'T REPLY. Many questions go
> unanswered in this "user list", some because no one knows the answer and
> some because the user may find the answer in the user manual.
>
> My knowledge is that GBSA is not mentioned in the user manual. There are
> many things not mentioned in the user manual, and a simple message to the
> "user list" never hurts.
>
> I hope Mark's comments do not keep others from asking any question that
> you want here.
>
> I have only been using NAMD for approximately 1 year, but I do my best to
> answer every question that I know the answer to. I hope others continue
> to do the same.
>
> Thanks.
>
> Joshua Moore
>
>
> On Tue, June 13, 2006 3:00 am, Mark Abraham wrote:
> > wang wrote:
> >> Dear all,
> >> Is the GBSA model in NAMD ? If the anser is "NO" , could you tell me
> >> that the GBSA model will be included in
> >> next version of NAMD ?
> >
> > This is not a helpdesk. Try reading the manual.
> >
> > Mark
> >
>
>
> --------------------------------------------------
> Joshua D. Moore
> Graduate Student
> North Carolina State University
> Department of Chemical and Biomolecular Engineering
> Box 7905 Centennial Campus
> Engineering Building I
> 911 Partners Way
> Raleigh, NC 27695-7905
> Phone: (919) 513-2051
> Fax: (919) 513-2470
> Email: jdmoore_at_unity.ncsu.edu
> --------------------------------------------------
>
>

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