From: Ayse Ozlem Sezerman (asezerman_at_su.sabanciuniv.edu)
Date: Thu May 18 2006 - 02:09:40 CDT
Hello to Everyone,
I am a new user of NAMD. I have done several simulations and now I want to
calculate the RMSDs.
But when I load the psf file and then the dcd file to VMD , no molecule appears
in the openGL display. It seems to be loaded when I look at C:\ VMD 1.8.4
window but the molecule doesnot appear on the display.
Also when I try todo the tcl script for RMSD as it is given in the manual, it
does not perform.
Does someone know what could it be?
MSc.Material Sci. and Eng.
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