part of a protein

From: AYTUG TUNCEL (ATUNCEL_at_ku.edu.tr)
Date: Tue Apr 25 2006 - 02:58:42 CDT

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hi all,

I was working with two proteins,their interaction, and because of the time limitations of computation I want NAMD to simulate only those regions of the proteins where they come close contact,their interaction sites,not for the rest of the proteins.Is there anyway to do this? so that I can increase the computational efficiency.thanks...

Aytug

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