From: Cesar Luis Avila (cavila_at_fbqf.unt.edu.ar)
Date: Mon Mar 27 2006 - 13:23:06 CST
I think VMD plugin uses pre equilibrated membranes to start from and
then replicates it along x and y axis. Building a model membrane from
scratch is not straightforward. As a guide you could read "Molecular
dynamics simulation of a phosphatidylglycerol membrane" FEBS Letters 580
(2006) 144-148 D.E. Elmore.
You may also use some pre equilibrated membranes available on the web.
Gan, Yong wrote:
> The VMD plug-in "membrane" can be used to generate lipid bilayer
> model. But, only POPC and POPE are available.
> Do you know any other methods, scripts or software packages which can
> generate DPPC, DOPC and DMPC etc. models?
> Thank you a lot!
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:43:26 CST