Date: Thu Mar 09 2006 - 12:29:00 CST
you can select protein in vmd.
The molecule can then be rotated
much more quickly.
From: lily jin <lily1907_at_yahoo.com>
Subj: namd-l: is possible to remove the waterbox before running VMD
Date: Thu Mar 9, 2006 1:16 pm
Size: 578 bytes
To: NAMD-L <namd-l_at_ks.uiuc.edu>, VMD-L <vmd-l_at_ks.uiuc.edu>
I need the waterbox to do simulation. But when I show the result in VMD, the waterbox is not necessary, which takes a lot of memory. Is it possible to do simulation with waterbox and remove it from the trajectory before displaying in VMD?
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