From: snoze pa (snoze.pa_at_gmail.com)
Date: Wed Feb 08 2006 - 18:42:00 CST
I want to use AMBER parameter in NAMD. In this regard I have a specific
1. Do I need to generate water box in amber or in VMD.
2. If I will use a water box from amber then how can I calculate size of
perodic orthogonal box.
Any other suggestion will be higly appreciated.
thanks in advance
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