Saving coordinates of each frame into one separate .pdb file from a 100-frame .dcd file.

From: Boyang Wang (pkuwangboyang_at_yahoo.com.cn)
Date: Fri Jan 20 2006 - 10:44:36 CST

• Next message: Carlos Simoes: "Re: Saving coordinates of each frame into one separate .pdb file from a 100-frame .dcd file."
• Previous message: Brian Bennion: "Re: Problem with NAMD and constraint failures"
• Next in thread: Carlos Simoes: "Re: Saving coordinates of each frame into one separate .pdb file from a 100-frame .dcd file."
• Reply: Carlos Simoes: "Re: Saving coordinates of each frame into one separate .pdb file from a 100-frame .dcd file."
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

Hi all, I am wondering what is the best way to save the coordinates of each frame into one separate .pdb file from a 100-frame .dcd file.
 
 What I can do now is to save each frame as one pdb file using VMD, and I can only do this one frame by one frame. This is very slow.
 
 Thanks for all your time.
 
 Boyang.
 

                
---------------------------------
 雅虎1G免费邮箱百分百防垃圾信
 雅虎助手-搜索、杀毒、防骚扰

• Next message: Carlos Simoes: "Re: Saving coordinates of each frame into one separate .pdb file from a 100-frame .dcd file."
• Previous message: Brian Bennion: "Re: Problem with NAMD and constraint failures"
• Next in thread: Carlos Simoes: "Re: Saving coordinates of each frame into one separate .pdb file from a 100-frame .dcd file."
• Reply: Carlos Simoes: "Re: Saving coordinates of each frame into one separate .pdb file from a 100-frame .dcd file."
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:43:15 CST