Re: how long is enough to heat up and equilibrate

From: JC Gumbart (gumbart_at_ks.uiuc.edu)
Date: Fri Nov 10 2006 - 08:06:21 CST

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For equilibration, you want to be sure your protein is stable.
Observing the RMSD is one good measure. Usually, a few nanoseconds
will suffice.

On Nov 8, 2006, at 12:05 PM, lily jin wrote:

> Hi, could you tell me, what affect the time for heating up and
> equilibrition? How long is enough for a protein of 200 aa? Thanks!
>
>
> Lily
>
>

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